PoplarV1, Main, Exploration, bibRecord, 001325

Integrated regulatory network reveals the early salt tolerance mechanism of Populus euphratica.

Identifieur interne : 001325 ( Main/Exploration ); précédent : 001324; suivant : 001326

Integrated regulatory network reveals the early salt tolerance mechanism of Populus euphratica.

Auteurs : Jiafei Chen [République populaire de Chine] ; Jin Zhang [République populaire de Chine] ; Jianjun Hu [République populaire de Chine] ; Wenwei Xiong [États-Unis] ; Chunguang Du [États-Unis] ; Mengzhu Lu [République populaire de Chine]

Source :

Scientific reports [ 2045-2322 ] ; 2017.

RBID : pubmed:28754917

Descripteurs français

English descriptors

KwdEn :
- Down-Regulation (drug effects), Down-Regulation (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (drug effects), Gene Ontology (MeSH), Gene Regulatory Networks (drug effects), Genes, Plant (MeSH), Populus (drug effects), Populus (genetics), Populus (physiology), Reproducibility of Results (MeSH), Salt Tolerance (drug effects), Salt Tolerance (genetics), Sodium Chloride (pharmacology), Stress, Physiological (drug effects), Stress, Physiological (genetics), Transcription, Genetic (drug effects).
MESH :
- chemical , pharmacology : Sodium Chloride.
- drug effects : Down-Regulation, Gene Expression Regulation, Plant, Gene Regulatory Networks, Populus, Salt Tolerance, Stress, Physiological, Transcription, Genetic.
- genetics : Down-Regulation, Populus, Salt Tolerance, Stress, Physiological.
- physiology : Populus.
- Gene Expression Profiling, Gene Ontology, Genes, Plant, Reproducibility of Results.

Abstract

Salinization is one of the major factors that threaten the existence of plants worldwide. Populus euphratica has been deemed to be a promising candidate for stress response research because of its high capacity to tolerate extreme salt stress. We carried out a genome-wide transcriptome analysis to identify the differentially expressed genes (DEGs) response to salt shock and elucidate the early salt tolerance mechanisms in P. euphratica. Both hierarchical clustering and DEG analysis demonstrated a predominant variation from time-course rather than NaCl intensity within 24 hours salt shock. Among the identified 1,678 salt-responsive DEGs, 74.1% (1,244) have not been reported before. We further created an integrated regulatory gene network of the salt response in P. euphratica by combining DEGs, transcription factors (TFs), Helitrons, miRNAs and their targets. The prominent pathways in this network are plant hormone transduction, starch and sucrose metabolism, RNA transport, protein processing in endoplasmic reticulum, etc. In addition, the network indicates calcium-related genes play key roles in P. euphratica response to salt shock. These results illustrated an overview of the systematic molecular response in P. euphratica under different intensities of salt shock and revealed the complex regulatory mechanism.

DOI: 10.1038/s41598-017-05240-0
PubMed: 28754917
PubMed Central: PMC5533726

Affiliations:

République populaire de Chine, États-Unis

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Gene Ontology (MeSH)</term>
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<term>Populus (drug effects)</term>
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<term>Salt Tolerance (drug effects)</term>
<term>Salt Tolerance (genetics)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Chlorure de sodium (pharmacologie)</term>
<term>Gene Ontology (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Populus (effets des médicaments et des substances chimiques)</term>
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<term>Populus (physiologie)</term>
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<term>Régulation négative (effets des médicaments et des substances chimiques)</term>
<term>Régulation négative (génétique)</term>
<term>Réseaux de régulation génique (effets des médicaments et des substances chimiques)</term>
<term>Stress physiologique (effets des médicaments et des substances chimiques)</term>
<term>Stress physiologique (génétique)</term>
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<term>Gene Expression Regulation, Plant</term>
<term>Gene Regulatory Networks</term>
<term>Populus</term>
<term>Salt Tolerance</term>
<term>Stress, Physiological</term>
<term>Transcription, Genetic</term>
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<term>Régulation de l'expression des gènes végétaux</term>
<term>Régulation négative</term>
<term>Réseaux de régulation génique</term>
<term>Stress physiologique</term>
<term>Tolérance au sel</term>
<term>Transcription génétique</term>
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<front><div type="abstract" xml:lang="en">Salinization is one of the major factors that threaten the existence of plants worldwide. Populus euphratica has been deemed to be a promising candidate for stress response research because of its high capacity to tolerate extreme salt stress. We carried out a genome-wide transcriptome analysis to identify the differentially expressed genes (DEGs) response to salt shock and elucidate the early salt tolerance mechanisms in P. euphratica. Both hierarchical clustering and DEG analysis demonstrated a predominant variation from time-course rather than NaCl intensity within 24 hours salt shock. Among the identified 1,678 salt-responsive DEGs, 74.1% (1,244) have not been reported before. We further created an integrated regulatory gene network of the salt response in P. euphratica by combining DEGs, transcription factors (TFs), Helitrons, miRNAs and their targets. The prominent pathways in this network are plant hormone transduction, starch and sucrose metabolism, RNA transport, protein processing in endoplasmic reticulum, etc. In addition, the network indicates calcium-related genes play key roles in P. euphratica response to salt shock. These results illustrated an overview of the systematic molecular response in P. euphratica under different intensities of salt shock and revealed the complex regulatory mechanism.</div>
</front>
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<Abstract><AbstractText>Salinization is one of the major factors that threaten the existence of plants worldwide. Populus euphratica has been deemed to be a promising candidate for stress response research because of its high capacity to tolerate extreme salt stress. We carried out a genome-wide transcriptome analysis to identify the differentially expressed genes (DEGs) response to salt shock and elucidate the early salt tolerance mechanisms in P. euphratica. Both hierarchical clustering and DEG analysis demonstrated a predominant variation from time-course rather than NaCl intensity within 24 hours salt shock. Among the identified 1,678 salt-responsive DEGs, 74.1% (1,244) have not been reported before. We further created an integrated regulatory gene network of the salt response in P. euphratica by combining DEGs, transcription factors (TFs), Helitrons, miRNAs and their targets. The prominent pathways in this network are plant hormone transduction, starch and sucrose metabolism, RNA transport, protein processing in endoplasmic reticulum, etc. In addition, the network indicates calcium-related genes play key roles in P. euphratica response to salt shock. These results illustrated an overview of the systematic molecular response in P. euphratica under different intensities of salt shock and revealed the complex regulatory mechanism.</AbstractText>
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<affiliations><list><country><li>République populaire de Chine</li>
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<name sortKey="Hu, Jianjun" sort="Hu, Jianjun" uniqKey="Hu J" first="Jianjun" last="Hu">Jianjun Hu</name>
<name sortKey="Lu, Mengzhu" sort="Lu, Mengzhu" uniqKey="Lu M" first="Mengzhu" last="Lu">Mengzhu Lu</name>
<name sortKey="Zhang, Jin" sort="Zhang, Jin" uniqKey="Zhang J" first="Jin" last="Zhang">Jin Zhang</name>
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Integrated regulatory network reveals the early salt tolerance mechanism of Populus euphratica.

Integrated regulatory network reveals the early salt tolerance mechanism of Populus euphratica.

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